PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 141aa    MW: 16312.3 Da    PI: 4.4482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928247.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.81.1e-23910832128
             NAM  32 evikevdiykvePwdLpkkvkaeekew.yfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvm 123
                     + i+e+di++++P++Lp   ++e k w yfF+  +   ++ g    r+t +gyWk +g +k ++++ ++e++g  + +vfy+g+ap+ ektdWv+
  XP_010928247.1   9 HLIHELDIFRYDPEQLPLDRDEEPKGWgYFFVFGKLGDEEgGGDGVRTTPAGYWKVQGAEKVIMDReETETMGFMREMVFYRGKAPSEEKTDWVL 103
                     469**************766777889999999888766653778899*****************9977788************************ PP

             NAM 124 heyrl 128
                     +eyrl
  XP_010928247.1 104 EEYRL 108
                     ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.2571134IPR003441NAC domain
SuperFamilySSF1019411.44E-242134IPR003441NAC domain
PfamPF023651.1E-931108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLGRPLTPHL IHELDIFRYD PEQLPLDRDE EPKGWGYFFV FGKLGDEEGG GDGVRTTPAG  60
YWKVQGAEKV IMDREETETM GFMREMVFYR GKAPSEEKTD WVLEEYRLNP ALSELKNPHD  120
TKMDNCLLCS VHKENTQLDS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-17313741168NO APICAL MERISTEM PROTEIN
1ut4_B3e-17313741168NO APICAL MERISTEM PROTEIN
1ut7_A3e-17313741168NO APICAL MERISTEM PROTEIN
1ut7_B3e-17313741168NO APICAL MERISTEM PROTEIN
3swm_A3e-17313744171NAC domain-containing protein 19
3swm_B3e-17313744171NAC domain-containing protein 19
3swm_C3e-17313744171NAC domain-containing protein 19
3swm_D3e-17313744171NAC domain-containing protein 19
3swp_A3e-17313744171NAC domain-containing protein 19
3swp_B3e-17313744171NAC domain-containing protein 19
3swp_C3e-17313744171NAC domain-containing protein 19
3swp_D3e-17313744171NAC domain-containing protein 19
4dul_A3e-17313741168NAC domain-containing protein 19
4dul_B3e-17313741168NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928247.11e-102PREDICTED: NAC domain-containing protein 55-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-18NAC domain containing protein 3